Browse genomic annotations and functional data
| # | Sequence | Description | GO Annotations | Cross Refs |
|---|---|---|---|---|
| 17076 |
SRR953582_primary_scf7180001891325_758-4914
Len: 4,156 bp
E-val: 1.1E-39
|
KTG35961.1hypothetical protein cypCar_00025492
methylated-DNA--[protein]-cysteine S-methyltransferase
|
GO:0006281P:DNA repair GO:0006357P:regulation of transcription by RNA polymerase II GO:0043161P:proteasome-mediated ubiquitin-dependent protein catabolic process GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0003908F:methylated-DNA-[protein]-cysteine S-methyltransferase activity GO:1990756F:ubiquitin-like ligase-substrate adaptor activity GO:0005737C:cytoplasm GO:0031463C:Cul3-RING ubiquitin ligase complex |
EC:EC:2.1.1.63 |
| 17077 |
SRR953582_primary_scf7180001891331_1-3425
Len: 3,424 bp
E-val: 8.6E-189
|
KTF84262.1hypothetical protein cypCar_00015875, partial
|
GO:0001841P:neural tube formation GO:0006357P:regulation of transcription by RNA polymerase II GO:0008589P:regulation of smoothened signaling pathway GO:0009953P:dorsal/ventral pattern formation GO:0014032P:neural crest cell development GO:0021536P:diencephalon development GO:0021846P:cell proliferation in forebrain GO:0030902P:hindbrain development GO:0033278P:cell proliferation in midbrain GO:0042127P:regulation of cell population proliferation GO:0045892P:negative regulation of DNA-templated transcription GO:0048385P:regulation of retinoic acid receptor signaling pathway GO:0048703P:embryonic viscerocranium morphogenesis GO:0060059P:embryonic retina morphogenesis in camera-type eye GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0005634C:nucleus |
- |
| 17078 |
SRR953582_primary_scf7180001891333_1-4276
Len: 4,275 bp
E-val: 0.0
|
KTG05603.1hypothetical protein cypCar_00005328, partial
|
GO:0001578P:microtubule bundle formation GO:0007019P:microtubule depolymerization GO:0035371C:microtubule plus-end |
- |
| 17079 |
SRR953582_primary_scf7180001891384_1-3259
Len: 3,258 bp
E-val: 0.0
|
XP_026124164.1zinc finger homeobox protein 3-like isoform X2
|
GO:0006357P:regulation of transcription by RNA polymerase II GO:0045664P:regulation of neuron differentiation GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0008270F:zinc ion binding GO:0005634C:nucleus |
- |
| 17080 |
SRR953582_primary_scf7180001891391_1-295
Len: 294 bp
E-val:
|
-
|
-
|
- |
| 17081 |
SRR953582_primary_scf7180001891393_283-2471
Len: 2,188 bp
E-val: 5.7E-29
|
ROL46454.1Glutamate receptor ionotropic, NMDA 2B
P-type phospholipid transporter; nucleoside-triphosphate phosphatase
|
GO:0006259P:DNA metabolic process GO:0006890P:retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum GO:0006897P:endocytosis GO:0044281P:small molecule metabolic process GO:0045332P:phospholipid translocation GO:0000287F:magnesium ion binding GO:0003676F:nucleic acid binding GO:0005524F:ATP binding GO:0016887F:ATP hydrolysis activity GO:0140326F:ATPase-coupled intramembrane lipid transporter activity GO:0005768C:endosome GO:0005802C:trans-Golgi network GO:0005886C:plasma membrane |
EC:EC:7.6.2.1 EC:EC:3.6.1.15 |
| 17082 |
SRR953582_primary_scf7180001891397_1-3864
Len: 3,863 bp
E-val: 3.9E-246
|
XP_018946908.1PREDICTED: histone-lysine N-methyltransferase SETD1A-like isoform X1
Acting on peptide bonds (peptidases); histone acetyltransferase; Transferring one-carbon groups
|
GO:0006338P:chromatin remodeling GO:0006355P:regulation of DNA-templated transcription GO:0006508P:proteolysis GO:0032259P:methylation GO:0003723F:RNA binding GO:0004252F:serine-type endopeptidase activity GO:0008270F:zinc ion binding GO:0032931F:histone H3K56 acetyltransferase activity GO:0036408F:histone H3K14 acetyltransferase activity GO:0042800F:histone H3K4 methyltransferase activity GO:0043992F:histone H3K9 acetyltransferase activity GO:0043993F:histone H3K18 acetyltransferase activity GO:0043994F:histone H3K23 acetyltransferase activity GO:0043995F:histone H4K5 acetyltransferase activity GO:0043996F:histone H4K8 acetyltransferase activity GO:0043997F:histone H4K12 acetyltransferase activity GO:0043999F:histone H2AK5 acetyltransferase activity GO:0044012F:histone H2AK9 acetyltransferase activity GO:0044014F:histone H2BK5 acetyltransferase activity GO:0044015F:histone H2BK12 acetyltransferase activity GO:0044016F:histone H3K4 acetyltransferase activity GO:0044017F:histone H3K27 acetyltransferase activity GO:0044018F:histone H3K36 acetyltransferase activity GO:0046972F:histone H4K16 acetyltransferase activity GO:0140908F:histone H3K122 acetyltransferase activity GO:0000775C:chromosome, centromeric region GO:0048188C:Set1C/COMPASS complex |
EC:EC:3.4.21 EC:EC:2.3.1.48 EC:EC:2.1.1 |
| 17083 |
SRR953582_primary_scf7180001891418_19-1398
Len: 1,379 bp
E-val: 1.1E-256
|
KTG05443.1hypothetical protein cypCar_00013754, partial
|
-
|
- |
| 17084 |
SRR953582_primary_scf7180001891441_1-1067
Len: 1,066 bp
E-val: 8.9E-185
|
XP_018936029.1PREDICTED: POU domain, class 3, transcription factor 3-B-like isoform X1
|
GO:0006357P:regulation of transcription by RNA polymerase II GO:0007420P:brain development GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus |
- |
| 17085 |
SRR953582_primary_scf7180001891471_814-4050
Len: 3,236 bp
E-val: 1.2E-91
|
XP_018941154.1PREDICTED: transcription factor AP-2-delta-like, partial
|
GO:0042127P:regulation of cell population proliferation GO:0045944P:positive regulation of transcription by RNA polymerase II GO:0000977F:RNA polymerase II transcription regulatory region sequence-specific DNA binding GO:0001228F:DNA-binding transcription activator activity, RNA polymerase II-specific GO:0005634C:nucleus |
- |
| 17086 |
SRR953582_primary_scf7180001891489_314-1057
Len: 743 bp
E-val: 6.7E-139
|
XP_018938481.1PREDICTED: claudin-4-like
|
GO:0005198F:structural molecule activity GO:0005886C:plasma membrane GO:0005923C:bicellular tight junction |
- |
| 17087 |
SRR953582_primary_scf7180001891509_1901-2642
Len: 741 bp
E-val: 6.1E-100
|
KTG43183.1hypothetical protein cypCar_00045876
|
GO:1902476P:chloride transmembrane transport GO:0005254F:chloride channel activity GO:0005783C:endoplasmic reticulum GO:0016020C:membrane |
- |
| 17088 |
SRR953582_primary_scf7180001891577_387-1965
Len: 1,578 bp
E-val: 4.6E-52
|
XP_018978478.1PREDICTED: LOW QUALITY PROTEIN: C-Maf-inducing protein-like
|
GO:0005654C:nucleoplasm GO:0005829C:cytosol |
- |
| 17089 |
SRR953582_primary_scf7180001891721_632-1086
Len: 454 bp
E-val: 7.0E-30
|
ROI16458.1Immunoglobulin kappa variable 1-9, partial
|
-
|
- |
| 17090 |
SRR953582_primary_scf7180001891888_1-1658
Len: 1,657 bp
E-val: 4.6E-55
|
XP_018932211.1PREDICTED: probable polypeptide N-acetylgalactosaminyltransferase 8
|
GO:0006486P:obsolete protein glycosylation GO:0006493P:protein O-linked glycosylation GO:0004653F:polypeptide N-acetylgalactosaminyltransferase activity GO:0016757F:glycosyltransferase activity GO:0030246F:carbohydrate binding GO:0000139C:Golgi membrane GO:0005794C:Golgi apparatus GO:0016020C:membrane |
- |
| 17091 |
SRR953582_primary_scf7180001892009_459-812
Len: 353 bp
E-val: 7.5E-56
|
XP_018925381.1PREDICTED: uncharacterized protein LOC109052387 isoform X1
|
GO:0004888F:transmembrane signaling receptor activity GO:0005886C:plasma membrane |
- |
| 17092 |
SRR953582_primary_scf7180001892205_1-1584
Len: 1,583 bp
E-val: 1.9E-82
|
RXN34375.1myosin-1 isoform X3
Acting on peptide bonds (peptidases)
|
GO:0008233F:peptidase activity |
EC:EC:3.4 |
| 17093 |
SRR953582_primary_scf7180001892213_1-3471
Len: 3,470 bp
E-val: 2.1E-25
|
XP_016427109.1PREDICTED: solute carrier family 12 member 2-like
|
GO:0006884P:cell volume homeostasis GO:0035725P:sodium ion transmembrane transport GO:0042472P:inner ear morphogenesis GO:0048798P:swim bladder inflation GO:0055064P:chloride ion homeostasis GO:0055075P:potassium ion homeostasis GO:0055078P:sodium ion homeostasis GO:0072488P:ammonium transmembrane transport GO:1902476P:chloride transmembrane transport GO:1990573P:potassium ion import across plasma membrane GO:0008511F:sodium:potassium:chloride symporter activity GO:0008519F:ammonium channel activity GO:0042802F:identical protein binding GO:0046872F:metal ion binding GO:0016323C:basolateral plasma membrane GO:0016324C:apical plasma membrane |
- |
| 17094 |
SRR953582_primary_scf7180001892213_7954-8594
Len: 640 bp
E-val: 1.1E-52
|
XP_018966719.1PREDICTED: fibrillin-2-like
|
GO:0048731P:system development GO:0005509F:calcium ion binding GO:0001527C:microfibril GO:0005576C:extracellular region |
- |
| 17095 |
SRR953582_primary_scf7180001892220_2047-10755
Len: 8,708 bp
E-val: 2.2E-116
|
KTG46479.1hypothetical protein cypCar_00004132
|
GO:0048523P:negative regulation of cellular process GO:0110165C:cellular anatomical structure |
- |
| 17096 |
SRR953582_primary_scf7180001892223_1480-9003
Len: 7,523 bp
E-val: 2.9E-48
|
XP_018957346.1PREDICTED: collagen alpha-1(XI) chain-like
|
GO:0008201F:heparin binding GO:0030020F:extracellular matrix structural constituent conferring tensile strength GO:0005581C:collagen trimer GO:0005615C:extracellular space GO:0031012C:extracellular matrix |
- |
| 17097 |
SRR953582_primary_scf7180001892244_2710-8687
Len: 5,977 bp
E-val: 2.1E-206
|
XP_018970494.1PREDICTED: dual specificity protein phosphatase 8-like
protein-serine/threonine phosphatase; protein-tyrosine-phosphatase
|
GO:0006338P:chromatin remodeling GO:0006357P:regulation of transcription by RNA polymerase II GO:0043409P:negative regulation of MAPK cascade GO:0008330F:protein tyrosine/threonine phosphatase activity GO:0017017F:MAP kinase tyrosine/serine/threonine phosphatase activity GO:0017018F:myosin phosphatase activity GO:0033192F:calmodulin-dependent protein phosphatase activity GO:0033550F:MAP kinase tyrosine phosphatase activity GO:0140791F:histone H2AXS139 phosphatase activity GO:0180004F:RNA polymerase II CTD heptapeptide repeat Y1 phosphatase activity GO:0180005F:RNA polymerase II CTD heptapeptide repeat T4 phosphatase activity GO:0180006F:RNA polymerase II CTD heptapeptide repeat S2 phosphatase activity GO:0180007F:RNA polymerase II CTD heptapeptide repeat S5 phosphatase activity GO:0180008F:RNA polymerase II CTD heptapeptide repeat S7 phosphatase activity GO:1990439F:MAP kinase serine/threonine phosphatase activity GO:0005737C:cytoplasm |
EC:EC:3.1.3.16 EC:EC:3.1.3.48 |
| 17098 |
SRR953582_primary_scf7180001892259_1-6047
Len: 6,046 bp
E-val: 8.7E-152
|
XP_018928522.1PREDICTED: E3 ubiquitin-protein ligase RNF19A-like
Acyltransferases
|
GO:0006511P:ubiquitin-dependent protein catabolic process GO:0016567P:protein ubiquitination GO:0008270F:zinc ion binding GO:0031624F:ubiquitin conjugating enzyme binding GO:0061630F:ubiquitin protein ligase activity GO:0000151C:ubiquitin ligase complex GO:0005737C:cytoplasm GO:0016020C:membrane |
EC:EC:2.3.2 |
| 17099 |
SRR953582_primary_scf7180001892278_1-2554
Len: 2,553 bp
E-val: 4.8E-11
|
OBS57672.1hypothetical protein A6R68_11203
nucleoside-triphosphate phosphatase
|
GO:0003924F:GTPase activity GO:0005525F:GTP binding |
EC:EC:3.6.1.15 |
| 17100 |
SRR953582_primary_scf7180001892279_3766-5144
Len: 1,378 bp
E-val: 2.0E-48
|
ROL53186.1Transposon Tf2-9 polyprotein
|
GO:0006259P:DNA metabolic process GO:0003824F:catalytic activity |
- |