Browse genomic annotations and functional data
| # | Sequence | Description | GO Annotations | Cross Refs |
|---|---|---|---|---|
| 17301 |
SRR953582_primary_scf7180001895412_1-3462
Len: 3,461 bp
E-val: 8.2E-30
|
XP_018958105.1PREDICTED: LIM domain transcription factor LMO4
|
GO:0046872F:metal ion binding |
- |
| 17302 |
SRR953582_primary_scf7180001895433_1-786
Len: 785 bp
E-val: 1.2E-26
|
XP_016350274.1PREDICTED: fibroblast growth factor receptor 3-like
receptor protein-tyrosine kinase
|
GO:0006915P:apoptotic process GO:0007173P:epidermal growth factor receptor signaling pathway GO:0008284P:positive regulation of cell population proliferation GO:0008286P:insulin receptor signaling pathway GO:0008543P:fibroblast growth factor receptor signaling pathway GO:0010604P:positive regulation of macromolecule metabolic process GO:0030154P:cell differentiation GO:0031547P:brain-derived neurotrophic factor receptor signaling pathway GO:0035790P:platelet-derived growth factor receptor-alpha signaling pathway GO:0035791P:platelet-derived growth factor receptor-beta signaling pathway GO:0036323P:vascular endothelial growth factor receptor-1 signaling pathway GO:0038063P:collagen-activated tyrosine kinase receptor signaling pathway GO:0038084P:vascular endothelial growth factor signaling pathway GO:0038109P:Kit signaling pathway GO:0038145P:macrophage colony-stimulating factor signaling pathway GO:0043410P:positive regulation of MAPK cascade GO:0048009P:insulin-like growth factor receptor signaling pathway GO:0048012P:hepatocyte growth factor receptor signaling pathway GO:0048013P:ephrin receptor signaling pathway GO:0080090P:regulation of primary metabolic process GO:0005004F:GPI-linked ephrin receptor activity GO:0005005F:transmembrane-ephrin receptor activity GO:0005006F:epidermal growth factor receptor activity GO:0005007F:fibroblast growth factor receptor activity GO:0005008F:hepatocyte growth factor receptor activity GO:0005009F:insulin receptor activity GO:0005010F:insulin-like growth factor receptor activity GO:0005011F:macrophage colony-stimulating factor receptor activity GO:0005018F:platelet-derived growth factor alpha-receptor activity GO:0005019F:platelet-derived growth factor beta-receptor activity GO:0005020F:stem cell factor receptor activity GO:0005021F:vascular endothelial growth factor receptor activity GO:0005524F:ATP binding GO:0008288F:boss receptor activity GO:0017134F:fibroblast growth factor binding GO:0036332F:placental growth factor receptor activity GO:0038062F:protein tyrosine kinase collagen receptor activity GO:0060175F:brain-derived neurotrophic factor receptor activity GO:0005886C:plasma membrane GO:0043235C:receptor complex |
EC:EC:2.7.10.1 |
| 17303 |
SRR953582_primary_scf7180001895435_1-3378
Len: 3,377 bp
E-val: 4.6E-25
|
XP_014910155.1PREDICTED: paired box protein Pax-2-B-like
|
GO:0001708P:cell fate specification GO:0006357P:regulation of transcription by RNA polymerase II GO:0007422P:peripheral nervous system development GO:0009880P:embryonic pattern specification GO:0021588P:cerebellum formation GO:0021703P:locus ceruleus development GO:0030878P:thyroid gland development GO:0030901P:midbrain development GO:0030917P:midbrain-hindbrain boundary development GO:0034672P:anterior/posterior pattern specification involved in pronephros development GO:0035775P:pronephric glomerulus morphogenesis GO:0043049P:otic placode formation GO:0060118P:vestibular receptor cell development GO:0060271P:cilium assembly GO:0061386P:closure of optic fissure GO:0072114P:pronephros morphogenesis GO:0000978F:RNA polymerase II cis-regulatory region sequence-specific DNA binding GO:0000981F:DNA-binding transcription factor activity, RNA polymerase II-specific GO:0005634C:nucleus |
- |
| 17304 |
SRR953582_primary_scf7180001895479_416-2172
Len: 1,756 bp
E-val: 1.9E-46
|
XP_018957642.1PREDICTED: cyclin N-terminal domain-containing protein 2-like
|
GO:0000082P:G1/S transition of mitotic cell cycle GO:0016538F:cyclin-dependent protein serine/threonine kinase regulator activity GO:0000307C:cyclin-dependent protein kinase holoenzyme complex GO:0005634C:nucleus GO:0005737C:cytoplasm |
- |
| 17305 |
SRR953582_primary_scf7180001895485_1-1973
Len: 1,972 bp
E-val: 4.8E-168
|
KTG04060.1hypothetical protein cypCar_00042705
|
GO:0007186P:G protein-coupled receptor signaling pathway GO:0071398P:cellular response to fatty acid GO:0004930F:G protein-coupled receptor activity GO:0005886C:plasma membrane |
- |
| 17306 |
SRR953582_primary_scf7180001895488_1-3848
Len: 3,847 bp
E-val: 2.1E-215
|
KTF79743.1hypothetical protein cypCar_00020507
Acting on peptide bonds (peptidases); phosphoinositide phospholipase C
|
GO:0006508P:proteolysis GO:0016042P:lipid catabolic process GO:0046488P:phosphatidylinositol metabolic process GO:0048015P:phosphatidylinositol-mediated signaling GO:0051209P:release of sequestered calcium ion into cytosol GO:0004177F:aminopeptidase activity GO:0004435F:phosphatidylinositol-4,5-bisphosphate phospholipase C activity GO:0005509F:calcium ion binding GO:0008236F:serine-type peptidase activity GO:0015276F:ligand-gated monoatomic ion channel activity GO:0016020C:membrane |
EC:EC:3.4.11 EC:EC:3.1.4.11 |
| 17307 |
SRR953582_primary_scf7180001895489_463-2952
Len: 2,489 bp
E-val: 3.6E-43
|
XP_692080.2TBC1 domain family member 12 isoform X1
|
GO:0005096F:GTPase activator activity GO:0031267F:small GTPase binding |
- |
| 17308 |
SRR953582_primary_scf7180001895505_1-2019
Len: 2,018 bp
E-val: 6.7E-8
|
XP_018958880.1PREDICTED: excitatory amino acid transporter 1-like
|
GO:0003007P:heart morphogenesis GO:0007420P:brain development GO:0010468P:regulation of gene expression GO:0015804P:neutral amino acid transport GO:0034087P:establishment of mitotic sister chromatid cohesion GO:0048565P:digestive tract development GO:0048703P:embryonic viscerocranium morphogenesis GO:0070779P:D-aspartate import across plasma membrane GO:0071169P:establishment of protein localization to chromatin GO:0098712P:L-glutamate import across plasma membrane GO:0140009P:L-aspartate import across plasma membrane GO:0140588P:chromatin looping GO:1990414P:replication-born double-strand break repair via sister chromatid exchange GO:0003682F:chromatin binding GO:0005313F:L-glutamate transmembrane transporter activity GO:0015175F:neutral L-amino acid transmembrane transporter activity GO:0015501F:glutamate:sodium symporter activity GO:0046872F:metal ion binding GO:0061775F:cohesin loader activity GO:0005886C:plasma membrane GO:0090694C:Scc2-Scc4 cohesin loading complex |
- |
| 17309 |
SRR953582_primary_scf7180001895530_594-2645
Len: 2,051 bp
E-val: 1.4E-40
|
XP_018950193.1PREDICTED: fructose-bisphosphate aldolase B-like
|
GO:0005622C:intracellular anatomical structure |
- |
| 17310 |
SRR953582_primary_scf7180001895556_1-1806
Len: 1,805 bp
E-val: 1.2E-29
|
XP_018929327.1PREDICTED: LOW QUALITY PROTEIN: transformation/transcription domain-associated protein-like
|
GO:0001964P:startle response GO:0006281P:DNA repair GO:0006355P:regulation of DNA-templated transcription GO:0035675P:neuromast hair cell development GO:0042481P:regulation of odontogenesis GO:0060536P:cartilage morphogenesis GO:0140861P:DNA repair-dependent chromatin remodeling GO:0000124C:SAGA complex GO:0005634C:nucleus GO:0035267C:NuA4 histone acetyltransferase complex |
- |
| 17311 |
SRR953582_primary_scf7180001895615_1-3153
Len: 3,152 bp
E-val: 2.2E-53
|
XP_026138304.1rho GTPase-activating protein 32-like isoform X3
|
GO:0007165P:signal transduction GO:0007264P:small GTPase-mediated signal transduction GO:0005096F:GTPase activator activity GO:0035091F:phosphatidylinositol binding GO:0001650C:fibrillar center GO:0005654C:nucleoplasm GO:0005794C:Golgi apparatus GO:0005938C:cell cortex GO:0015629C:actin cytoskeleton |
- |
| 17312 |
SRR953582_primary_scf7180001895620_983-2803
Len: 1,820 bp
E-val: 9.6E-22
|
BAE46430.1reverse transcriptase
|
GO:0016477P:cell migration GO:0030833P:regulation of actin filament polymerization GO:0034314P:Arp2/3 complex-mediated actin nucleation GO:0051015F:actin filament binding GO:0005737C:cytoplasm GO:0005885C:Arp2/3 protein complex |
- |
| 17313 |
SRR953582_primary_scf7180001895625_430-1995
Len: 1,565 bp
E-val: 3.5E-145
|
KTG44570.1hypothetical protein cypCar_00010891
|
- | |
| 17314 |
SRR953582_primary_scf7180001895657_1-3249
Len: 3,248 bp
E-val: 0.0
|
KTF93579.1hypothetical protein cypCar_00039714, partial
|
GO:0000902P:cell morphogenesis GO:0007043P:cell-cell junction assembly GO:0007156P:homophilic cell-cell adhesion GO:0016339P:calcium-dependent cell-cell adhesion GO:0016477P:cell migration GO:0031175P:neuron projection development GO:0034332P:adherens junction organization GO:0044331P:cell-cell adhesion mediated by cadherin GO:0005509F:calcium ion binding GO:0008013F:beta-catenin binding GO:0045296F:cadherin binding GO:0005912C:adherens junction GO:0016342C:catenin complex |
- |
| 17315 |
SRR953582_primary_scf7180001895671_201-1058
Len: 857 bp
E-val: 3.0E-151
|
KTF87341.1hypothetical protein cypCar_00033132
|
GO:0006874P:intracellular calcium ion homeostasis GO:0035725P:sodium ion transmembrane transport GO:0060291P:long-term synaptic potentiation GO:0060292P:long-term synaptic depression GO:0070588P:calcium ion transmembrane transport GO:0071805P:potassium ion transmembrane transport GO:0005262F:calcium channel activity GO:0008273F:calcium, potassium:sodium antiporter activity GO:0005886C:plasma membrane |
- |
| 17316 |
SRR953582_primary_scf7180001895715_1-2695
Len: 2,694 bp
E-val: 1.3E-30
|
XP_018966787.1PREDICTED: LOW QUALITY PROTEIN: cadherin-2-like, partial
|
GO:0000902P:cell morphogenesis GO:0002009P:morphogenesis of an epithelium GO:0007043P:cell-cell junction assembly GO:0007156P:homophilic cell-cell adhesion GO:0007416P:synapse assembly GO:0016339P:calcium-dependent cell-cell adhesion GO:0016477P:cell migration GO:0034332P:adherens junction organization GO:0044331P:cell-cell adhesion mediated by cadherin GO:0005509F:calcium ion binding GO:0008013F:beta-catenin binding GO:0045296F:cadherin binding GO:0005737C:cytoplasm GO:0005912C:adherens junction GO:0009986C:cell surface GO:0014069C:postsynaptic density GO:0014704C:intercalated disc GO:0016342C:catenin complex GO:0030027C:lamellipodium GO:0030057C:desmosome GO:0042383C:sarcolemma GO:0043005C:neuron projection GO:0045177C:apical part of cell GO:0048787C:presynaptic active zone membrane GO:0099634C:postsynaptic specialization membrane |
- |
| 17317 |
SRR953582_primary_scf7180001895813_928-1956
Len: 1,028 bp
E-val: 2.4E-22
|
KTF79299.1hypothetical protein cypCar_00044182
poly(ADP-ribose) glycohydrolase
|
GO:0005975P:carbohydrate metabolic process GO:0006282P:regulation of DNA repair GO:0009225P:nucleotide-sugar metabolic process GO:1990966P:ATP generation from poly-ADP-D-ribose GO:0004649F:poly(ADP-ribose) glycohydrolase activity GO:0005634C:nucleus GO:0005737C:cytoplasm |
EC:EC:3.2.1.143 |
| 17318 |
SRR953582_primary_scf7180001895834_776-2575
Len: 1,799 bp
E-val: 2.2E-175
|
XP_018966268.1PREDICTED: E3 ubiquitin-protein ligase DTX3L-like isoform X1
Ligases; Acyltransferases
|
GO:0007219P:Notch signaling pathway GO:0016567P:protein ubiquitination GO:0008270F:zinc ion binding GO:0016874F:ligase activity GO:0061630F:ubiquitin protein ligase activity GO:0005737C:cytoplasm |
EC:EC:6 EC:EC:2.3.2 |
| 17319 |
SRR953582_primary_scf7180001895844_1-2480
Len: 2,479 bp
E-val: 8.0E-27
|
XP_016148297.1PREDICTED: metastasis-associated protein MTA1-like, partial
|
GO:0000122P:negative regulation of transcription by RNA polymerase II GO:0006302P:double-strand break repair GO:0010212P:response to ionizing radiation GO:0003713F:transcription coactivator activity GO:0003714F:transcription corepressor activity GO:0042826F:histone deacetylase binding GO:0016581C:NuRD complex |
- |
| 17320 |
SRR953582_primary_scf7180001895926_1-296
Len: 295 bp
E-val: 3.1E-10
|
XP_018950725.1PREDICTED: ferritin, middle subunit-like
|
GO:0006826P:iron ion transport GO:0006879P:intracellular iron ion homeostasis GO:0008198F:ferrous iron binding GO:0008199F:ferric iron binding GO:0005737C:cytoplasm |
- |
| 17321 |
SRR953582_primary_scf7180001896004_1-1935
Len: 1,934 bp
E-val: 7.1E-148
|
XP_018929449.1PREDICTED: LOW QUALITY PROTEIN: keratinocyte differentiation factor 1-like
|
GO:0003334P:keratinocyte development GO:0010482P:regulation of epidermal cell division GO:0030054C:cell junction |
- |
| 17322 |
SRR953582_primary_scf7180001896006_183-2804
Len: 2,621 bp
E-val: 5.8E-68
|
KTG39303.1hypothetical protein cypCar_00015147
|
GO:0003950F:NAD+ poly-ADP-ribosyltransferase activity GO:0016757F:glycosyltransferase activity GO:0005737C:cytoplasm |
- |
| 17323 |
SRR953582_primary_scf7180001896064_1-1306
Len: 1,305 bp
E-val: 5.1E-17
|
XP_026081569.1microfibril-associated glycoprotein 4-like
|
- | |
| 17324 |
SRR953582_primary_scf7180001896081_474-2279
Len: 1,805 bp
E-val: 0.0
|
XP_018982108.1PREDICTED: E3 ubiquitin-protein ligase RNF139-like isoform X1
Acyltransferases
|
GO:0036503P:ERAD pathway GO:0043161P:proteasome-mediated ubiquitin-dependent protein catabolic process GO:0008270F:zinc ion binding GO:0061630F:ubiquitin protein ligase activity GO:0036513C:Derlin-1 retrotranslocation complex |
EC:EC:2.3.2 |
| 17325 |
SRR953582_primary_scf7180001896205_326-1285
Len: 959 bp
E-val: 5.0E-163
|
XP_018938923.1PREDICTED: G-protein coupled receptor 55-like
|
GO:0007200P:phospholipase C-activating G protein-coupled receptor signaling pathway GO:0035025P:positive regulation of Rho protein signal transduction GO:0004930F:G protein-coupled receptor activity GO:0005886C:plasma membrane |
- |