Gene Function: DNA Metabolism

Functional and statistical data for significant genes

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Showing 1,023 results (Page 23 of 41)
GO Legend: Biological Process (P) Molecular Function (F) Cellular Component (C)
Sequence & Stats Description GO Annotations Gene Function
SRR941867_primary_scf7180002320437_1-2752
Len: 2,751 bp
Hits: 20
E-val: 0
Sim: 68.17%
 XP_016304101.1 histone-lysine N-methyltransferase SETD1B-A-like
GO:0006338P:chromatin remodeling
GO:0032259P:methylation
GO:0003723F:RNA binding
GO:0140999F:histone H3K4 trimethyltransferase activity
GO:0048188C:Set1C/COMPASS complex
DNA Metabolism
SRR941867_primary_scf7180002320547_189-1970
Len: 1,781 bp
Hits: 20
E-val: 8.50E-47
Sim: 51.5%
 XP_026134134.1non-structural maintenance of chromosomes element 4 homolog A-like
GO:0006281P:DNA repair
GO:0006310P:DNA recombination
GO:0005634C:nucleus
GO:0005694C:chromosome
GO:0030915C:Smc5-Smc6 complex
DNA Metabolism
SRR941867_primary_scf7180002320879_258-1826
Len: 1,568 bp
Hits: 20
E-val: 5.70E-297
Sim: 85.93%
 XP_016365833.1 piggyBac transposable element-derived protein 4-like
GO:0003677F:DNA binding
GO:0008270F:zinc ion binding
GO:0030527F:structural constituent of chromatin
GO:0046982F:protein heterodimerization activity
GO:0000786C:nucleosome
GO:0005634C:nucleus
DNA Metabolism
SRR941867_primary_scf7180002321068_1-1752
Len: 1,751 bp
Hits: 20
E-val: 2.60E-32
Sim: 60.82%
 XP_018976499.1 structural maintenance of chromosomes protein 6-like
GO:0006281P:DNA repair
GO:0005488F:binding
GO:0005694C:chromosome
DNA Metabolism
SRR941867_primary_scf7180002321842_1-1345
Len: 1,344 bp
Hits: 20
E-val: 1.40E-102
Sim: 85.28%
 XP_018981130.1 E3 ubiquitin-protein ligase TRIM39-like
GO:0016567P:protein ubiquitination
GO:0045087P:innate immune response
GO:0004842F:ubiquitin-protein transferase activity
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0005737C:cytoplasm
DNA Metabolism
SRR941867_primary_scf7180002321899_1-2014
Len: 2,013 bp
Hits: 20
E-val: 9.60E-55
Sim: 97.14%
 XP_016125710.1 E3 ubiquitin-protein ligase arih1-like
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0016567P:protein ubiquitination
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0031624F:ubiquitin conjugating enzyme binding
GO:0061630F:ubiquitin protein ligase activity
GO:0005737C:cytoplasm
GO:0016604C:nuclear body
GO:0019005C:SCF ubiquitin ligase complex
GO:0031462C:Cul2-RING ubiquitin ligase complex
GO:0031463C:Cul3-RING ubiquitin ligase complex
GO:0031464C:Cul4A-RING E3 ubiquitin ligase complex
GO:0097413C:Lewy body
DNA Metabolism
SRR941867_primary_scf7180002321984_1-1577
Len: 1,576 bp
Hits: 20
E-val: 4.30E-204
Sim: 93.94%
 XP_018918835.1 kelch-like protein 40b
GO:0031398P:positive regulation of protein ubiquitination
GO:0032436P:positive regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0036268P:swimming
GO:0048741P:skeletal muscle fiber development
GO:0098528P:skeletal muscle fiber differentiation
GO:1990756F:ubiquitin-like ligase-substrate adaptor activity
GO:0031463C:Cul3-RING ubiquitin ligase complex
GO:0031672C:A band
GO:0031674C:I band
DNA Metabolism
SRR941867_primary_scf7180002323117_600-1427
Len: 827 bp
Hits: 20
E-val: 2.50E-126
Sim: 87.89%
 XP_018938010.1 E3 ubiquitin-protein ligase PDZRN3-like
GO:0007528P:neuromuscular junction development
GO:0016567P:protein ubiquitination
GO:0043122P:regulation of canonical NF-kappaB signal transduction
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0061630F:ubiquitin protein ligase activity
DNA Metabolism
SRR941867_primary_scf7180002323946_1-1495
Len: 1,494 bp
Hits: 20
E-val: 2.60E-33
Sim: 66.32%
 XP_018977566.1 phospholipase D3-like isoform X1
GO:0004527F:exonuclease activity
GO:0031901C:early endosome membrane
GO:0031902C:late endosome membrane
GO:0043202C:lysosomal lumen
DNA Metabolism
SRR941867_primary_scf7180002325720_214-949
Len: 735 bp
Hits: 20
E-val: 6.80E-43
Sim: 95.38%
 XP_018951277.1 N-terminal Xaa-Pro-Lys N-methyltransferase 1-like
GO:0006338P:chromatin remodeling
GO:0007051P:spindle organization
GO:0007059P:chromosome segregation
GO:0018013P:N-terminal peptidyl-glycine methylation
GO:0018016P:N-terminal peptidyl-proline dimethylation
GO:0035572P:N-terminal peptidyl-serine dimethylation
GO:0035573P:N-terminal peptidyl-serine trimethylation
GO:0042054F:histone methyltransferase activity
GO:0071885F:N-terminal protein N-methyltransferase activity
GO:0005634C:nucleus
GO:0005737C:cytoplasm
DNA Metabolism
SRR941867_primary_scf7180002325907_1-1656
Len: 1,655 bp
Hits: 20
E-val: 3.90E-14
Sim: 96.59%
 XP_026127741.1tyrosine-protein phosphatase non-receptor type 4-like isoform X1
GO:0006338P:chromatin remodeling
GO:0004726F:non-membrane spanning protein tyrosine phosphatase activity
GO:0008092F:cytoskeletal protein binding
GO:0030946F:protein tyrosine phosphatase activity, metal-dependent
GO:0140793F:histone H2AXY142 phosphatase activity
GO:0005737C:cytoplasm
GO:0005856C:cytoskeleton
GO:0009898C:cytoplasmic side of plasma membrane
DNA Metabolism
SRR941867_primary_scf7180002325967_656-1620
Len: 964 bp
Hits: 20
E-val: 1.00E-30
Sim: 92.69%
 XP_018930382.1 LOW QUALITY PROTEIN: large proline-rich protein BAG6-like
GO:0002376P:immune system process
GO:0006325P:chromatin organization
GO:0006915P:apoptotic process
GO:0007283P:spermatogenesis
GO:0030154P:cell differentiation
GO:0036503P:ERAD pathway
GO:0031593F:polyubiquitin modification-dependent protein binding
GO:0051787F:misfolded protein binding
GO:0005576C:extracellular region
GO:0005634C:nucleus
GO:0071818C:BAT3 complex
DNA Metabolism
SRR941867_primary_scf7180002326613_1415-1805
Len: 390 bp
Hits: 20
E-val: 8.70E-29
Sim: 97.17%
 XP_010782138.1 TAR DNA-binding protein 43-like isoform X1
GO:0006338P:chromatin remodeling
GO:0006397P:mRNA processing
GO:0008380P:RNA splicing
GO:0010468P:regulation of gene expression
GO:0003677F:DNA binding
GO:0003723F:RNA binding
GO:0004726F:non-membrane spanning protein tyrosine phosphatase activity
GO:0030946F:protein tyrosine phosphatase activity, metal-dependent
GO:0140793F:histone H2AXY142 phosphatase activity
GO:0000785C:chromatin
GO:0005654C:nucleoplasm
GO:0005739C:mitochondrion
GO:0016020C:membrane
DNA Metabolism
SRR941867_primary_scf7180002326760_1-414
Len: 413 bp
Hits: 20
E-val: 2.90E-27
Sim: 100%
 XP_026057186.1F-box/SPRY domain-containing protein 1
GO:0016567P:protein ubiquitination
GO:0043161P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0060386P:synapse assembly involved in innervation
GO:0019005C:SCF ubiquitin ligase complex
GO:0045202C:synapse
DNA Metabolism
SRR941867_primary_scf7180002327117_1237-1613
Len: 376 bp
Hits: 20
E-val: 4.60E-19
Sim: 95.82%
 XP_016299161.1 ubiquitin-like modifier-activating enzyme 6 isoform X1
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0006974P:DNA damage response
GO:0016567P:protein ubiquitination
GO:0016925P:protein sumoylation
GO:0004839F:ubiquitin activating enzyme activity
GO:0019780F:FAT10 activating enzyme activity
GO:0019948F:SUMO activating enzyme activity
GO:0005737C:cytoplasm
GO:0031510C:SUMO activating enzyme complex
DNA Metabolism
SRR941867_primary_scf7180002327559_1-1996
Len: 1,995 bp
Hits: 20
E-val: 8.10E-22
Sim: 98.94%
 RXN21732.1myoferlin isoform X2
GO:0001778P:plasma membrane repair
GO:0006282P:regulation of DNA repair
GO:0007165P:signal transduction
GO:0033292P:T-tubule organization
GO:0061025P:membrane fusion
GO:0004591F:oxoglutarate dehydrogenase (succinyl-transferring) activity
GO:0004649F:poly(ADP-ribose) glycohydrolase activity
GO:0030976F:thiamine pyrophosphate binding
GO:0046872F:metal ion binding
GO:0005886C:plasma membrane
GO:0030659C:cytoplasmic vesicle membrane
DNA Metabolism
SRR941867_primary_scf7180002327773_1-1422
Len: 1,421 bp
Hits: 20
E-val: 8.60E-42
Sim: 85.68%
 XP_018924932.1 aprataxin-like
GO:0000012P:single strand break repair
GO:0003697F:single-stranded DNA binding
GO:0003725F:double-stranded RNA binding
GO:0008270F:zinc ion binding
GO:0030983F:mismatched DNA binding
GO:0033699F:DNA 5'-adenosine monophosphate hydrolase activity
GO:0120108F:DNA-3'-diphospho-5'-guanosine diphosphatase activity
GO:1990165F:single-strand break-containing DNA binding
GO:0005654C:nucleoplasm
GO:0005730C:nucleolus
DNA Metabolism
SRR941867_primary_scf7180002330162_1-1676
Len: 1,675 bp
Hits: 20
E-val: 3.30E-24
Sim: 92.96%
 XP_026118197.1E3 ubiquitin-protein ligase RNF220-like isoform X6
GO:0016567P:protein ubiquitination
GO:0061630F:ubiquitin protein ligase activity
DNA Metabolism
SRR941867_primary_scf7180002331099_252-1153
Len: 901 bp
Hits: 20
E-val: 6.60E-72
Sim: 96.79%
 XP_018927056.1 E3 ubiquitin-protein ligase LNX-like
GO:0006511P:ubiquitin-dependent protein catabolic process
GO:0004842F:ubiquitin-protein transferase activity
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0005737C:cytoplasm
DNA Metabolism
SRR941867_primary_scf7180002331384_988-1641
Len: 653 bp
Hits: 20
E-val: 5.50E-121
Sim: 90.94%
 XP_018922617.1 RING finger protein 223-like
GO:0016567P:protein ubiquitination
GO:0008270F:zinc ion binding
GO:0061630F:ubiquitin protein ligase activity
GO:0016020C:membrane
DNA Metabolism
SRR941867_primary_scf7180002332167_1-1922
Len: 1,921 bp
Hits: 20
E-val: 6.30E-56
Sim: 76.37%
 XP_018966735.1 LOW QUALITY PROTEIN: phosphatidylinositol phosphatase PTPRQ-like
GO:0006338P:chromatin remodeling
GO:0004726F:non-membrane spanning protein tyrosine phosphatase activity
GO:0030946F:protein tyrosine phosphatase activity, metal-dependent
GO:0140793F:histone H2AXY142 phosphatase activity
GO:0016020C:membrane
DNA Metabolism
SRR941867_primary_scf7180002332232_371-984
Len: 613 bp
Hits: 20
E-val: 1.00E-23
Sim: 96.03%
 XP_018979522.1 39S ribosomal protein L44, mitochondrial-like
GO:0006396P:RNA processing
GO:0006626P:protein targeting to mitochondrion
GO:0070125P:mitochondrial translational elongation
GO:0090141P:positive regulation of mitochondrial fission
GO:0003725F:double-stranded RNA binding
GO:0004525F:ribonuclease III activity
GO:0005741C:mitochondrial outer membrane
GO:0005762C:mitochondrial large ribosomal subunit
GO:0005777C:peroxisome
GO:0070877C:microprocessor complex
DNA Metabolism
SRR941867_primary_scf7180002332406_329-1210
Len: 881 bp
Hits: 20
E-val: 8.00E-22
Sim: 95.29%
 XP_026061926.1ATP-dependent DNA helicase PIF1
GO:0000723P:telomere maintenance
GO:0001510P:RNA methylation
GO:0006281P:DNA repair
GO:0006310P:DNA recombination
GO:0003677F:DNA binding
GO:0003723F:RNA binding
GO:0005524F:ATP binding
GO:0008173F:RNA methyltransferase activity
GO:0009378F:four-way junction helicase activity
GO:0016887F:ATP hydrolysis activity
GO:0036121F:double-stranded DNA helicase activity
GO:0043139F:5'-3' DNA helicase activity
GO:0061749F:forked DNA-dependent helicase activity
GO:1990518F:single-stranded 3'-5' DNA helicase activity
GO:0005634C:nucleus
GO:0005739C:mitochondrion
DNA Metabolism
SRR941867_primary_scf7180002333247_867-1774
Len: 907 bp
Hits: 20
E-val: 7.00E-106
Sim: 90.1%
 XP_018978867.1 E3 ubiquitin-protein ligase Mdm2 isoform X1
GO:0010468P:regulation of gene expression
GO:0016567P:protein ubiquitination
GO:0043066P:negative regulation of apoptotic process
GO:0051726P:regulation of cell cycle
GO:0065008P:regulation of biological quality
GO:0002039F:p53 binding
GO:0008270F:zinc ion binding
GO:0016874F:ligase activity
GO:0042802F:identical protein binding
GO:0061630F:ubiquitin protein ligase activity
GO:0005654C:nucleoplasm
GO:0005730C:nucleolus
GO:0005737C:cytoplasm
DNA Metabolism
SRR941867_primary_scf7180002333324_1-1355
Len: 1,354 bp
Hits: 20
E-val: 2.20E-18
Sim: 98.04%
 XP_026072356.1chromodomain-helicase-DNA-binding protein 3-like isoform X2
GO:0006338P:chromatin remodeling
GO:0003677F:DNA binding
GO:0003682F:chromatin binding
GO:0005524F:ATP binding
GO:0008270F:zinc ion binding
GO:0009378F:four-way junction helicase activity
GO:0016887F:ATP hydrolysis activity
GO:0036121F:double-stranded DNA helicase activity
GO:0042393F:histone binding
GO:0061749F:forked DNA-dependent helicase activity
GO:0140658F:ATP-dependent chromatin remodeler activity
GO:1990518F:single-stranded 3'-5' DNA helicase activity
GO:0016581C:NuRD complex
DNA Metabolism